PyPedal 2.0.0
Free Version
Publisher Description
PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
Features
- Reading pedigree files in user-defined formats
- Checking pedigree integrity (duplicate IDs, parents younger than offspring, etc.)
- Generating summary information such as frequency of appearance in the pedigree file
- Reordering and renumbering of pedigree files
- Computation of the numerator relationship matrix (A) from a pedigree file using the tabular method
- Inbreeding calculations for large pedigrees
- Computation of average total and average individual coefficients of inbreeding and relationship
- Calculation of coefficients of partial inbreeding using an iterative tabular method (Lacy, 1996; Gulisija, 2006)
- Calculation of coefficients of ancestral inbreeding using the methods of Ballou (1997) or Suwanlee et al. (2007)
- Calculation of theoretical and actual effective population sizes
- Computation of effective founder number using the exact algorithm of Lacy
- Computation of effective founder number using the approximate algorithm of Boichard et al.
- Computation of effective ancestor number using the algorithms of Boichard et al.
- Selection of subpedigrees containing all ancestors of an animal
- Identification of the common relatives of two animals
- Calculation of the inbreeding of offspring from a prospective mating
- Output to ASCII text files, including matrices, coefficients of inbreeding and relationship, and summary information
- Importation and exportation of GEDCOM 5.5 files
- Importation and exportation of GENES 1.20 (dBase III) files
- Loading pedigrees from, and saving them to, MySQL, Postgres, and SQLite databases
- Simulation of pedigrees using an algorithm derived from that in Matvec 1.1a
About PyPedal
PyPedal is a free software published in the Teaching & Training Tools list of programs, part of Education.
This Teaching & Training Tools program is available in English. It was last updated on 22 April, 2024. PyPedal is compatible with the following operating systems: Linux, Mac, Windows.
The company that develops PyPedal is wintermind. The latest version released by its developer is 2.0.0. This version was rated by 1 users of our site and has an average rating of 5.0.
The download we have available for PyPedal has a file size of 15.66 MB. Just click the green Download button above to start the downloading process. The program is listed on our website since 2012-05-15 and was downloaded 78 times. We have already checked if the download link is safe, however for your own protection we recommend that you scan the downloaded software with your antivirus. Your antivirus may detect the PyPedal as malware if the download link is broken.
How to install PyPedal on your Windows device:
- Click on the Download button on our website. This will start the download from the website of the developer.
- Once the PyPedal is downloaded click on it to start the setup process (assuming you are on a desktop computer).
- When the installation is finished you should be able to see and run the program.
